Department of Biological Sciences

Research output

Research output per year 1978 2013 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2024

• 476 Article
• 257 Presentation
• 31 Poster
• 21 Chapter
• 101 More
  • 14 Paper
  • 11 Comment/debate
  • 11 Preprint
  • 10 Data set/Database
  • 9 Other report
  • 6 Meeting abstract
  • 5 Book
  • 5 Abstract
  • 5 Conference article
  • 4 Conference contribution
  • 4 Other
  • 3 Other contribution
  • 3 Doctoral Dissertation
  • 3 Master's Thesis
  • 2 Entry for encyclopedia/dictionary
  • 2 Editorial
  • 2 Digital or Visual Products
  • 1 Letter
  • 1 Working paper

Research output per year

Research output per year

Search results

• 2024

  Analysis of Morphological Change during a Co-invading Assemblage of Lizards in the Hawaiian Islands

  Phillips, J. G., Hagey, T. J., Hagemann, M. & Gering, E., 2024, (Accepted/In press) In: Evolutionary Biology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Climate-related variation of metabolic rate across the distribution of a broadly tolerant invasive forest pest

  Powers, S. D., Thompson, L. M., Parry, D., Grayson, K. L., Martinez, E. & Agosta, S. J., Jun 2024, In: Journal of Biogeography. 51, 6, p. 1117-1132 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Comparative Genomics Across Multiple Streptomyces murinus strains to identify Antifungal Metabolites using Streptomyces murinus strain SPC1 as the Reference Genome

  Korisapati, V., Kurani, D., Gandra, S., Mathew, S., Thomas, R., Johnson, N., Dhillon, B. & Gill, N., Apr 10 2024.

  Research output: Contribution to conference › Poster

  File

• Conserved Domains in Promoters of Differentially Expressed Genes Under High Night Temperature Stress in Rice: How to Find Them and What Can They Tell Us?

  Tobias, E., Handal, J. M., Lup, P., Egozi, M., Dhillon, B., Pereira, A. & Gill, N., Apr 10 2024.

  Research output: Contribution to conference › Poster

  File

• Cross ocean-basin population genetic dynamics in a pelagic top predator of high conservation concern, the oceanic whitetip shark, Carcharhinus longimanus

  Ruck, C. L., Shivji, M. S., Jabado, R. W. & Bernard, A. M., Jun 2024, In: Conservation Genetics. 25, 3, p. 677-695 19 p.

  Research output: Contribution to journal › Article › peer-review

• Estuary-Specific and Adaptive Habitat Suitability Index Model for the Eastern Oyster Crassostrea Virginica in the Pensacola Bay System, Florida, USA

  Geselbracht, L., Johnston, M., DeAngelis, B. M. & Birch, A., Apr 8 2024, In: Coastal Management.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Evolution of Sequencing Technologies and Implications for Transposon Research

  Varghese, R., Meghadri, J., Pulido-Luis, J. & Gill, N., Apr 3 2024.

  Research output: Contribution to conference › Poster

  File

• Fluoride Alters Gene Expression via Histone H3K27 Acetylation in Ameloblast-like LS8 Cells

  Yamashita, S., Okamoto, M., Mendonca, M., Fujiwara, N., Kitamura, E., Chang, C. S. S., Brueckner, S., Shindo, S., Kuriki, N., Cooley, M. A., Gill Dhillon, N., Kawai, T., Bartlett, J. D., Everett, E. T. & Suzuki, M., Sep 2024, In: International Journal of Molecular Sciences. 25, 17, 9600.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Genome analysis reveals three distinct lineages of the cosmopolitan white shark

  Wagner, I., Smolina, I., Koop, M. E. L., Bal, T., Lizano, A. M., Choo, L. Q., Hofreiter, M., Gennari, E., de Sabata, E., Shivji, M. S., Noble, L. R., Jones, C. S. & Hoarau, G., Aug 5 2024, In: Current Biology. 34, 15, p. 3582-3590.e4

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Heavy Metal Implications to Sediment Microbiome and Coral Reef Community

  Giarikos, D., Hirons, A. C. & Lopez, J. V., Mar 1 2024, Florida Department of Environmental Protection. 106 p.

  Research output: Book/Report › Other report

• High residency of a Critically Endangered hammerhead shark to a small area: implications for marine protected area management and design

  Herrera, M. A., Cardeñosa, D., Papastamatiou, Y. P., Vaudo, J., Bermúdez-Rivas, C. & Shivji, M., 2024, In: Marine Ecology Progress Series. 743, p. 47-63 17 p.

  Research output: Contribution to journal › Article › peer-review

• Identification of Bacteria and its Secondary Metabolites from Unique Entisol

  Peddiboyina, M., Sourial, M., Baldauf, P. & Raja, A., Apr 3 2024.

  Research output: Contribution to conference › Presentation

• Identification of Regulatory Roles for Stress Responsive Transposable Elements in Rice

  Handal, J. M., Lup, P., Tobias, E. E., Pereira, A. & Gill, N., Apr 10 2024.

  Research output: Contribution to conference › Poster

  File

• Integrating vertical and horizontal movements of shortfin mako sharks Isurus oxyrinchus in the eastern North Pacific Ocean

  Vaudo, J., Dewar, H., Byrne, M., Wetherbee, B. & Shivji, M., Mar 20 2024, In: Marine Ecology Progress Series. 732, p. 85-99 15 p.

  Research output: Contribution to journal › Article › peer-review

• Legacy of a magic gene-CCR5-∆32: From discovery to clinical benefit in a generation

  OBrien, S. J., Mar 19 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 12, e2321907121.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Longest recorded migration of a silky shark (Carcharhinus falciformis) reveals extensive use of international waters of the Tropical Eastern Pacific

  Salinas-de-León, P., Vaudo, J., Logan, R., Suarez-Moncada, J. & Shivji, M., Jul 2024, In: Journal of Fish Biology. 105, 1, p. 378-381 4 p.

  Research output: Contribution to journal › Article › peer-review

• Microbial diversity, genomics, and phage–host interactions of cyanobacterial harmful algal blooms

  Krausfeldt, L. E., Shmakova, E., Lee, H. W., Mazzei, V., Loftin, K. A., Smith, R. P., Karwacki, E., Fortman, P. E., Rosen, B. H., Urakawa, H., Dadlani, M., Colwell, R. R. & Lopez, J. V., Jul 2024, In: mSystems. 9, 7

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Ontogenetic variation in metabolic rate–temperature relationships during larval development

  Powers, S. D., Grayson, K. L., Martinez, E. & Agosta, S. J., Jul 2024, In: Journal of Experimental Biology. 227, 14, jeb247912.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Poor Oral Health Is Associated With Inflammation, Aortic Valve Calcification, and Brain Volume Among Forager-Farmers

  HORUS Team, Apr 1 2024, In: The journals of gerontology. Series A, Biological sciences and medical sciences. 79, 5

  Research output: Contribution to journal › Article › peer-review

• Postrelease Survival of Eleutherodactylus coqui: Advancing Managed Translocations as an Adaptive Tool for Climate-Vulnerable Anurans

  Chaparro, R., Rivera-Burgos, A. C., Eaton, M. J., Terando, A. J., Martinez, E. & Collazo, J. A., 2024, In: Herpetologica.

  Research output: Contribution to journal › Article › peer-review

• Signals of selection and ancestry in independently feral Gallus gallus populations

  Gering, E., Johnsson, M., Theunissen, D., Martin Cerezo, M. L., Steep, A., Getty, T., Henriksen, R. & Wright, D., Mar 30 2024, In: Molecular Ecology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Supragingival Plaque Microbiomes in a Diverse South Florida Population

  Demehri, S., Vardar, S., Godoy, C., Lopez, J. V., Samuel, P., Kawai, T. & Ozga, A. T., Sep 2024, In: Microorganisms. 12, 9, 13 p., 1921.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Sustained observation of the deep-pelagic Gulf of Mexico: The DEEPEND|RESTORE program

  Sutton, T., Cook, A., Boswell, K. M., Bracken-Grissom, H., Eytan, R., Fenolio, D., Frank, T., Hahn, D., Johnston, M. W., Judkins, H., Milligan, R., Moore, J., Quinlan, J. A., Richards, T., Romero, I. C., Shivji, M. S., Bernard, A., Vecchione, M., Woodstock, M. & Zhang, Y., Feb 24 2024.

  Research output: Contribution to conference › Poster

• The genome sequence of a heart cockle, Fragum fragum (Linnaeus, 1758)

  Lopez, J., 2024, (In preparation).

  Research output: Working paper › Preprint

• The genome sequence of a heart cockle, Fragum fragum (Linnaeus, 1758)

  Li, R., Li, J., Lemer, S., Lopez, J. V., Oatley, G., Clayton-Lucey, I. A., Sinclair, E., Aunin, E., Gettle, N., Santos, C., Paulini, M., Niu, H., McKenna, V. & O’Brien, R., 2024, In: Wellcome Open Research. 9, 129.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The genome sequence of a heart cockle, Fragum whitleyi Iredale, 1929

  Lopez, J., 2024, (In preparation).

  Research output: Working paper › Preprint

• The genome sequence of the giant clam, Tridacna crocea (Lamarck, 1819)

  Lopez, J., 2024, (In preparation).

  Research output: Working paper › Preprint

• The genome sequence of the giant clam, Tridacna gigas (Linnaeus, 1758)

  Lopez, J., 2024, (In preparation) p. 145.

  Research output: Working paper › Preprint

• The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869)

  Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership & Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team, 2024, In: Wellcome Open Research. 9, 366.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The genome sequence of the horse’s hoof clam, Hippopus hippopus (Linnaeus, 1758)

  Lopez, J., 2024, (In preparation).

  Research output: Working paper › Preprint

• Tracking 4 years in the life of a female whale shark shows consistent migrations in the Gulf of Mexico and Caribbean

  Daye, D., De La Parra, R., Vaudo, J., Harvey, J., Harvey, G., Shivji, M. & Wetherbee, B., Jul 8 2024, In: Marine and Freshwater Research. 75, 10, MF23147.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional profiles of Microcystis reveal gene expression shifts that promote bloom persistence in in situ mesocosms.

  Krausfeldt, L. E., Samuel, P., Smith, R. P., Colwell, R., Urakawa, H., Rosen, B. & Lopez, J. V., 2024, In: Microbiology Spectrum. 19 p., e01369-24.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Unique skin microbiome: insights to understanding bacterial symbionts in octopuses

  Bennice, C. O., Krausfeldt, L. E., Brooks, W. R. & Lopez, J. V., Aug 9 2024, In: Frontiers In Marine Science. 11, 1448199.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Unraveling the Elasmobranch: A Look at Shark Oral Microbiomes in South Florida

  Peddiboyina, M., Sourial, M., Baldauf, P. & Raja, A., Apr 3 2024.

  Research output: Contribution to conference › Presentation

• Unraveling the Elasmobranch: A Look at Shark Oral Microbiomes in South Florida

  Chigurupati, V., Paronich, P., Sadik, A., Ozga, A. T. & Raja, A., Oct 13 2024.

  Research output: Contribution to conference › Presentation

• Warm acclimation of the green sunfish, Lepomis cyanellus, results in reduced mitochondrial energy transduction efficiency

  Wright, N. W., Morrison, R. G. & Martinez, E., 2024, In: Bios: Journal of the National Biology Honor Society. 95, 3, p. 117-124 8 p.

  Research output: Contribution to journal › Article › peer-review

• You Shall Not Pass: The Pacific Oxygen Minimum Zone Creates a Boundary to Shortfin Mako Shark Distribution in the Eastern North Pacific Ocean

  Byrne, M., Dewar, H., Vaudo, J., Wetherbee, B. & Shivji, M., 2024, (Accepted/In press) In: Diversity and Distributions. 14 p., e13924.

  Research output: Contribution to journal › Article › peer-review

  Open Access
• 2023

  Abstract 1451: Comparing effectiveness of two antibodies (Aducanumab and Gantenerumab) on reducing amyloid-beta plaques

  Paleati, N., Godbole, A., Neravetla, P., Lavin, E. S. & Sikora, A., 2023, p. 103497.

  Research output: Contribution to conference › Abstract

• Abstract 1452: Modeling the binding of ω-conotoxin and other toxins to the N-type voltage-gated calcium channel

  Sha, S., Guillen-Tapia, A., Welch, S., Lavin, E. S. & Sikora, A., 2023, p. 104024.

  Research output: Contribution to conference › Abstract

• Abstract 1473: Modeling Binding of Beta-site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1) Inhibitor Aminoquinoline (68 K) for Possible Treatment of Alzheimer's Disease

  Dalal, J., Averineni, S., Madadi, P., Lavin, E. S. & Sikora, A., 2023, p. 104026.

  Research output: Contribution to conference › Abstract

• Abstract 1531: Facilitating the collaborative scientific process through an interdisciplinary undergraduate protein modeling course

  Julakanti, P., Carreras, J. N., De Abreu, I. R., Luib, R., Abbas, L., Likki, S., Lavin, E. S. & Sikora, A., 2023, p. 103503.

  Research output: Contribution to conference › Abstract

• Abstract 1532: Exploring structural differences between antagonistic peptides for the development of orally bioavailable PCSK9 inhibitors

  Soni, B., Vemulapalli, P., Lavin, E. S. & Sikora, A., 2023, p. 104031.

  Research output: Contribution to conference › Abstract

• Acoustic telemetry provides insights for improving conservation and management at a spawning aggregation site of the endangered Nassau grouper (Epinephelus striatus)

  Nemeth, R. S., Kadison, E., Jossart, J., Shivji, M., Wetherbee, B. & Matley, J., Mar 31 2023, In: Frontiers In Marine Science. 10, 1154689.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Ancient DNA reveals genetic admixture in China during tiger evolution

  Sun, X., Liu, Y. C., Tiunov, M. P., Gimranov, D. O., Zhuang, Y., Han, Y., Driscoll, C. A., Pang, Y., Li, C., Pan, Y., Velasco, M. S., Gopalakrishnan, S., Yang, R. Z., Li, B. G., Jin, K., Xu, X., Uphyrkina, O., Huang, Y., Wu, X. H. & Gilbert, M. T. P. & 3 others, O’Brien, S. J., Yamaguchi, N. & Luo, S. J., Nov 2023, In: Nature Ecology and Evolution. 7, 11, p. 1914-1929 16 p.

  Research output: Contribution to journal › Article › peer-review

• A Systematic Analysis of Global Education in Anatomy and Physiology Amidst COVID-19

  Patel, S., Mahajan, S. & De, S., Apr 15 2023.

  Research output: Contribution to conference › Presentation

• Change and stasis of distinct sediment microbiomes across Port Everglades Inlet (PEI) and the adjacent coral reefs

  Krausfeldt, L. E., Lopez, J. V., Bilodeau, C., Lee, H. W. & Casali, S. L., Jan 13 2023, In: PeerJ. 11, p. e14288

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Chromosome-Length Assembly of the Baikal Seal (Pusa sibirica) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal

  DNA Zoo Consortium, Yakupova, A., Tomarovsky, A., Totikov, A., Beklemisheva, V., Logacheva, M., Perelman, P. L., Komissarov, A., Dobrynin, P., Krasheninnikova, K., Tamazian, G., Serdyukova, N. A., Rayko, M., Bulyonkova, T., Cherkasov, N., Pylev, V., Peterfeld, V., Penin, A., Balanovska, E. & Lapidus, A. & 4 others, OBrien, S. J., Graphodatsky, A., Koepfli, K. P. & Kliver, S., Mar 2023, In: Genes. 14, 3, 619.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity

  Houck, M. L., Koepfli, K. P., Hains, T., Khan, R., Charter, S. J., Fronczek, J. A., Misuraca, A. C., Kliver, S., Perelman, P. L., Beklemisheva, V., Graphodatsky, A., Luo, S. J., O’Brien, S. J., Lim, N. T. L., Chin, J. S. C., Guerra, V., Tamazian, G., Omer, A., Weisz, D. & Kaemmerer, K. & 13 others, Sturgeon, G., Gaspard, J., Hahn, A., McDonough, M., Garcia-Treviño, I., Gentry, J., Coke, R. L., Janecka, J. E., Harrigan, R. J., Tinsman, J., Smith, T. B., Aiden, E. L. & Dudchenko, O., Jun 2023, In: Chromosome Research. 31, 2, 13.

  Research output: Contribution to journal › Article › peer-review

• Decontamination and Annotation of the Draft Genome Sequence of the Oomycete Lagenidium giganteum ARSEF 373

  Morgan, W. R. & Tartar, A., Apr 13 2023, In: Microbiology Resource Announcements. 12, 5

  Research output: Contribution to journal › Article › peer-review

  File

• Dysregulation of miR-155 Expression in Professional Mixed Martial Arts (MMA) Fighters

  Cabrera, D., Thompson, K., Thomas, J. D., Peacock, C., Antonio, J., Tartar, J. & Tartar, A., Feb 13 2023, In: Cureus. 15, 2

  Research output: Contribution to journal › Article › peer-review

  File